Variant report

Variant	rs10046546
Chromosome Location	chr7:48654769-48654770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10272766	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12532743	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536486	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1534394	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4506157	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4917165	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60354797	0.90[ASN][1000 genomes]
rs62447354	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62447355	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447357	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7803560	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9642322	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv3432166	chr7:48652660-48655083	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv993578	chr7:48652945-48654841	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48635800-48672200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48650200-48672200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:48652200-48654800	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links