Variant report

Variant	rs10047220
Chromosome Location	chr1:220726346-220726347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10047144	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059796	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063243	0.83[YRI][hapmap]
rs12068169	0.84[YRI][hapmap]
rs12072544	0.84[YRI][hapmap]
rs12073437	0.85[AMR][1000 genomes]
rs12074437	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12085964	0.84[YRI][hapmap]
rs12408093	1.00[MEX][hapmap]
rs17007809	1.00[MEX][hapmap]
rs17007991	1.00[ASW][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56269108	0.85[AMR][1000 genomes]
rs58629118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657303	0.85[AMR][1000 genomes]
rs6683556	0.85[AMR][1000 genomes]
rs73107663	0.85[AMR][1000 genomes]
rs7556281	0.85[AMR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
3	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220722600-220738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:220723200-220738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:220724200-220726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:220724200-220727800	Enhancers	Fetal Heart	heart
9	chr1:220724400-220727400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:220724400-220727400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
12	chr1:220724600-220726600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:220724600-220726800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:220724600-220729000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:220724600-220729200	Weak transcription	Adipose Nuclei	Adipose
16	chr1:220724600-220737600	Weak transcription	Fetal Brain Female	brain
17	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
18	chr1:220724800-220728800	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:220724800-220738800	Weak transcription	Right Atrium	heart
20	chr1:220725200-220726800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:220725200-220728000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:220726000-220732600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:220726200-220726400	Enhancers	Brain Anterior Caudate	brain
24	chr1:220726200-220726400	Enhancers	Right Ventricle	heart
25	chr1:220726200-220726600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:220726200-220726800	Weak transcription	Brain Germinal Matrix	brain
27	chr1:220726200-220726800	Enhancers	HMEC	breast
28	chr1:220726200-220727200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:220726200-220727400	Enhancers	NHEK	skin
30	chr1:220726200-220728000	Enhancers	Left Ventricle	heart

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