Variant report

Variant	rs10047266
Chromosome Location	chr10:25811835-25811836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25811568..25812567-chr10:25927033..25928066,5	MCF-7	breast:
2	chr10:25811744..25812457-chr10:25926562..25927514,2	MCF-7	breast:
3	chr10:25810786..25813575-chr10:25815912..25817946,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508699	0.95[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10741093	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764556	0.99[ASN][1000 genomes]
rs10828810	0.91[JPT][hapmap]
rs10828815	0.87[JPT][hapmap]
rs10828816	0.99[ASN][1000 genomes]
rs10828817	0.99[ASN][1000 genomes]
rs11014580	0.82[JPT][hapmap]
rs11014581	0.87[JPT][hapmap]
rs11014595	0.99[ASN][1000 genomes]
rs12221280	0.84[JPT][hapmap]
rs1329252	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335208	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1335209	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1536836	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1536837	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs1887925	0.91[JPT][hapmap]
rs1932148	0.85[JPT][hapmap]
rs1932149	0.87[JPT][hapmap]
rs1932150	0.87[JPT][hapmap]
rs2184518	0.81[EUR][1000 genomes]
rs3923088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4459183	0.87[JPT][hapmap]
rs4474349	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4623781	0.87[JPT][hapmap]
rs4749043	0.87[JPT][hapmap]
rs5001528	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482488	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs6482489	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6482490	0.95[ASN][1000 genomes]
rs7077800	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7080715	0.95[ASN][1000 genomes]
rs7080997	0.95[ASN][1000 genomes]
rs7082952	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7084736	0.99[ASN][1000 genomes]
rs7086249	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[ASN][1000 genomes]
rs7096556	0.95[ASN][1000 genomes]
rs7097106	0.95[ASN][1000 genomes]
rs7097224	0.87[ASN][1000 genomes]
rs7097392	0.95[ASN][1000 genomes]
rs7100942	0.91[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7478285	1.00[CEU][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs943984	0.82[JPT][hapmap]
rs952600	0.99[ASN][1000 genomes]
rs962696	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10047266	GPR158	cis	parietal	SCAN
rs10047266	MLLT10	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25810600-25812200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:25811600-25812800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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