Variant report

Variant	rs10047915
Chromosome Location	chr14:72435075-72435076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10129266	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10132631	1.00[CEU][hapmap]
rs10134070	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10134883	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10146194	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11851166	1.00[CEU][hapmap]
rs28410983	1.00[EUR][1000 genomes]
rs28417884	1.00[EUR][1000 genomes]
rs28702941	1.00[EUR][1000 genomes]
rs28776512	1.00[EUR][1000 genomes]
rs2877775	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28829720	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57027270	1.00[EUR][1000 genomes]
rs6574036	0.83[YRI][hapmap]
rs7150767	1.00[EUR][1000 genomes]
rs7151873	1.00[EUR][1000 genomes]
rs7151878	1.00[EUR][1000 genomes]
rs72625695	1.00[EUR][1000 genomes]
rs728495	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72426800-72437200	Weak transcription	Left Ventricle	heart
2	chr14:72430400-72435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:72431200-72435400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72434400-72435600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72435000-72435200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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