Variant report

Variant	rs10049558
Chromosome Location	chr4:87752753-87752754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11930689	1.00[AMR][1000 genomes]
rs11940878	1.00[AMR][1000 genomes]
rs17012052	1.00[AMR][1000 genomes]
rs58965805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
2	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
3	chr4:87737800-87754800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:87739800-87757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:87740200-87755200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
7	chr4:87745400-87757400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:87751200-87753600	Strong transcription	Left Ventricle	heart
9	chr4:87751200-87754400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:87751600-87753000	Enhancers	Ovary	ovary
11	chr4:87751600-87753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:87751600-87753400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:87751600-87753600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:87751600-87753800	Enhancers	NHLF	lung
15	chr4:87752000-87752800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:87752000-87753200	Enhancers	HSMMtube	muscle
17	chr4:87752000-87753200	Enhancers	NH-A	brain
18	chr4:87752200-87752800	Enhancers	A549	lung
19	chr4:87752200-87753000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:87752200-87753000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:87752200-87753000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:87752200-87753000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr4:87752200-87753000	Enhancers	Stomach Mucosa	stomach
24	chr4:87752200-87753200	Enhancers	Fetal Lung	lung
25	chr4:87752200-87753200	Enhancers	HSMM	muscle
26	chr4:87752400-87752800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:87752400-87752800	Flanking Active TSS	NHDF-Ad	bronchial
28	chr4:87752400-87753000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:87752400-87753000	Enhancers	Placenta	Placenta
30	chr4:87752400-87753000	Enhancers	Lung	lung
31	chr4:87752400-87753000	Flanking Active TSS	Osteobl	bone
32	chr4:87752400-87753200	Flanking Active TSS	Hela-S3	cervix
33	chr4:87752600-87752800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:87752600-87753000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:87752600-87753000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:87752600-87753000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:87752600-87753000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr4:87752600-87753000	Enhancers	Esophagus	oesophagus
39	chr4:87752600-87753200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:87752600-87753200	Transcr. at gene 5' and 3'	NHEK	skin
41	chr4:87752600-87753800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:87752600-87754000	Enhancers	HMEC	breast
43	chr4:87752600-87764400	Weak transcription	Adipose Nuclei	Adipose

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