Variant report

Variant	rs10050208
Chromosome Location	chr4:56623865-56623866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10049523	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133412	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12499711	0.90[CHB][hapmap]
rs12505860	0.88[JPT][hapmap]
rs13107874	0.80[AMR][1000 genomes]
rs13120644	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs13137899	0.80[AMR][1000 genomes]
rs13138083	0.80[AMR][1000 genomes]
rs28626784	1.00[ASN][1000 genomes]
rs28703181	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34862321	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923477	0.88[JPT][hapmap]
rs4241999	1.00[ASN][1000 genomes]
rs6816150	1.00[ASN][1000 genomes]
rs7696321	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9685488	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879021	chr4:56482750-56648713	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv879022	chr4:56617884-56668431	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56620000-56625000	Enhancers	Hela-S3	cervix
2	chr4:56620200-56624800	Enhancers	HUVEC	blood vessel
3	chr4:56621800-56624600	Weak transcription	Osteobl	bone
4	chr4:56622000-56624000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:56622600-56624000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:56622600-56624000	Enhancers	HMEC	breast
7	chr4:56622800-56625000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:56622800-56625000	Enhancers	K562	blood
9	chr4:56623200-56624000	Enhancers	HepG2	liver
10	chr4:56623200-56625000	Enhancers	Stomach Mucosa	stomach
11	chr4:56623400-56624400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:56623400-56624400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:56623400-56624600	Weak transcription	Colonic Mucosa	Colon
14	chr4:56623400-56624600	Weak transcription	Right Atrium	heart
15	chr4:56623600-56624000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:56623600-56624200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:56623600-56625800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr4:56623800-56625200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:56623800-56625200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:56623800-56625200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links