Variant report

Variant	rs10052169
Chromosome Location	chr5:144997358-144997359
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10036664	1.00[AMR][1000 genomes]
rs10040204	1.00[AMR][1000 genomes]
rs10043538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052024	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10054314	1.00[AMR][1000 genomes]
rs10073313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077242	1.00[AMR][1000 genomes]
rs10476875	1.00[AMR][1000 genomes]
rs13354398	1.00[AMR][1000 genomes]
rs13356403	1.00[AMR][1000 genomes]
rs13436791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2217647	1.00[AMR][1000 genomes]
rs28507009	1.00[AMR][1000 genomes]
rs4345360	1.00[AMR][1000 genomes]
rs59384625	1.00[ASN][1000 genomes]
rs73302023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs868778	1.00[AMR][1000 genomes]
rs9285664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144997200-144998200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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