Variant report

Variant	rs10053236
Chromosome Location	chr5:16540912-16540913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16536135..16537892-chr5:16539475..16542072,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1020952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12109050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1240647	0.80[ASN][1000 genomes]
rs1240951	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1240952	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1551936	0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs162758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs162862	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1991468	0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1991469	0.92[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs1991470	0.94[ASN][1000 genomes]
rs1991471	0.85[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs1991472	0.85[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs2019248	0.95[ASN][1000 genomes]
rs2019260	0.92[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs248132	0.90[CEU][hapmap]
rs248133	0.80[EUR][1000 genomes]
rs2560830	0.92[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs2560831	0.87[ASN][1000 genomes]
rs2617422	0.92[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs2617423	0.91[CHB][hapmap];0.95[ASN][1000 genomes]
rs2617424	0.92[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs2617425	0.92[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs2617426	0.91[CHB][hapmap];0.93[ASN][1000 genomes]
rs31283	0.92[CHB][hapmap];0.91[ASN][1000 genomes]
rs31288	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs334470	0.91[CEU][hapmap]
rs334473	0.80[EUR][1000 genomes]
rs334485	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334486	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334487	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334490	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334491	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs334492	0.91[CEU][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs425779	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs595358	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs621932	0.92[JPT][hapmap]
rs6858960	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs899186	0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs991891	0.92[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs994099	0.85[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:16525000-16542000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr5:16532200-16542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:16533200-16543200	Enhancers	Fetal Heart	heart
5	chr5:16534200-16541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:16534400-16541200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:16535400-16543400	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:16535600-16541200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:16535600-16546000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:16536200-16541200	Enhancers	Brain Angular Gyrus	brain
11	chr5:16536400-16541200	Enhancers	Brain Hippocampus Middle	brain
12	chr5:16536400-16541400	Enhancers	Brain Anterior Caudate	brain
13	chr5:16536800-16541200	Enhancers	Brain Substantia Nigra	brain
14	chr5:16536800-16552800	Weak transcription	Thymus	Thymus
15	chr5:16537600-16542200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:16538200-16541200	Enhancers	HSMM	muscle
17	chr5:16538200-16541200	Enhancers	HSMMtube	muscle
18	chr5:16538400-16541400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:16538400-16542200	Weak transcription	Colonic Mucosa	Colon
20	chr5:16538600-16546400	Weak transcription	Right Ventricle	heart
21	chr5:16539000-16541000	Enhancers	Liver	Liver
22	chr5:16539000-16541000	Enhancers	NHLF	lung
23	chr5:16539000-16541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:16539000-16541200	Enhancers	NH-A	brain
25	chr5:16539000-16541200	Enhancers	Osteobl	bone
26	chr5:16539000-16541400	Enhancers	HMEC	breast
27	chr5:16539200-16541000	Enhancers	Right Atrium	heart
28	chr5:16539200-16541200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:16539200-16541200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:16539200-16554400	Weak transcription	Small Intestine	intestine
31	chr5:16539600-16541200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr5:16539800-16541000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr5:16539800-16541200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:16539800-16541200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:16539800-16541200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:16539800-16541200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:16539800-16541200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr5:16539800-16541400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:16539800-16541400	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr5:16539800-16541400	Enhancers	NHEK	skin
41	chr5:16539800-16541600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:16539800-16542200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:16539800-16545600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:16539800-16545600	Weak transcription	Esophagus	oesophagus
45	chr5:16539800-16545800	Weak transcription	Pancreas	Pancrea
46	chr5:16539800-16546400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr5:16539800-16548400	Weak transcription	Aorta	Aorta
48	chr5:16539800-16548400	Weak transcription	Gastric	stomach
49	chr5:16540400-16541200	Enhancers	Psoas Muscle	Psoas
50	chr5:16540400-16541400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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