Variant report

Variant	rs10054243
Chromosome Location	chr5:178106730-178106731
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10053520	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10059471	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10067394	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10067520	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10069172	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10073981	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074246	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10074290	0.95[EUR][1000 genomes]
rs10074345	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076133	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10076269	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13361974	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55851391	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55967507	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56085036	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56323986	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56712569	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57218963	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58624072	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923422	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61502758	1.00[EUR][1000 genomes]
rs72810680	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72810681	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810686	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810687	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1820003	chr5:178103405-178113183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1822037	chr5:178103405-178113183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1823571	chr5:178103405-178113183	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1837537	chr5:178103405-178122284	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1840322	chr5:178103405-178122284	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv600428	chr5:178103564-178113126	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv600429	chr5:178103564-178113183	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1823842	chr5:178105326-178113183	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1843063	chr5:178105326-178117482	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3470824	chr5:178106693-178111968	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178105400-178109400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:178105400-178109800	Weak transcription	Monocytes-CD14+_RO01746	blood

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