Variant report

Variant	rs10055652
Chromosome Location	chr5:151650420-151650421
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10068083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069511	0.89[AMR][1000 genomes]
rs10077195	0.87[AMR][1000 genomes]
rs1035960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10515650	0.89[AMR][1000 genomes]
rs13356053	0.89[AMR][1000 genomes]
rs13356620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358035	0.87[AMR][1000 genomes]
rs17112920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112976	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28649615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151644800-151651200	Weak transcription	Ovary	ovary
2	chr5:151649000-151651200	Enhancers	Right Atrium	heart
3	chr5:151649000-151651400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:151649200-151651200	Enhancers	HMEC	breast
5	chr5:151649200-151651400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:151649600-151651400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr5:151649600-151652200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:151649800-151650600	Enhancers	Right Ventricle	heart
9	chr5:151650200-151651000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:151650400-151653200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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