Variant report
| Variant | rs10055882 |
|---|---|
| Chromosome Location | chr5:16023198-16023199 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10051749 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10076986 | 0.92[ASN][1000 genomes] |
| rs11133826 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12655516 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1393266 | 0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1502027 | 0.90[ASN][1000 genomes] |
| rs168747 | 0.90[ASN][1000 genomes] |
| rs181833 | 0.82[ASN][1000 genomes] |
| rs2402101 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs250496 | 0.82[ASN][1000 genomes] |
| rs250497 | 0.82[ASN][1000 genomes] |
| rs250501 | 0.82[ASN][1000 genomes] |
| rs250503 | 0.90[ASN][1000 genomes] |
| rs250504 | 0.90[ASN][1000 genomes] |
| rs250505 | 0.88[ASN][1000 genomes] |
| rs2599503 | 0.90[ASN][1000 genomes] |
| rs32824 | 0.82[ASN][1000 genomes] |
| rs32825 | 0.82[ASN][1000 genomes] |
| rs32827 | 0.87[ASN][1000 genomes] |
| rs32828 | 0.87[ASN][1000 genomes] |
| rs32829 | 0.90[ASN][1000 genomes] |
| rs32830 | 0.90[ASN][1000 genomes] |
| rs4701645 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4701646 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4701647 | 0.86[EUR][1000 genomes] |
| rs4702120 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs974846 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830216 | chr5:15860662-16060420 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv427712 | chr5:15883439-16055856 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv830217 | chr5:16004704-16225229 | Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv1825549 | chr5:16006008-16031799 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:16022000-16025800 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr5:16022400-16025400 | Weak transcription | Fetal Heart | heart |
