Variant report

Variant	rs10058679
Chromosome Location	chr5:93165396-93165397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10075718	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2119449	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
2	chr5:93131200-93179200	Weak transcription	Ovary	ovary
3	chr5:93137000-93165400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
5	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
6	chr5:93137200-93166800	Weak transcription	HSMM	muscle
7	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
8	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:93153800-93166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:93156400-93167000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:93156600-93169200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:93158000-93170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:93158200-93166600	Weak transcription	Primary T cells from cord blood	blood
16	chr5:93158400-93168000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:93159000-93166200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:93161200-93167600	Weak transcription	HSMMtube	muscle
19	chr5:93161200-93168800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
21	chr5:93162200-93179600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:93163800-93179800	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:93164600-93180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:93164800-93166400	Strong transcription	Primary B cells from cord blood	blood
25	chr5:93164800-93167800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:93165000-93179800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr5:93165200-93165600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:93165200-93166200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:93165200-93167800	Weak transcription	Brain Anterior Caudate	brain

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