Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10036337	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043080	1.00[CHB][hapmap]
rs10054930	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10060250	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071854	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10074010	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10080163	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356315	0.86[ASN][1000 genomes]
rs1358224	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345486	0.93[ASN][1000 genomes]
rs17403118	0.93[ASN][1000 genomes]
rs34279532	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850728	0.93[ASN][1000 genomes]
rs56819255	1.00[ASN][1000 genomes]
rs60808813	1.00[ASN][1000 genomes]
rs62378112	0.86[ASN][1000 genomes]
rs62380274	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73262789	0.86[ASN][1000 genomes]
rs7707471	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9327047	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117001200-117003400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:117001600-117003000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:117001600-117003200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:117001600-117003200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:117001800-117003000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:117001800-117003200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:117002000-117003000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:117002000-117003200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:117002200-117003000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:117002400-117003000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:117002600-117003000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:117002600-117003200	Enhancers	Fetal Intestine Large	intestine
13	chr5:117002600-117003600	Enhancers	Fetal Intestine Small	intestine
14	chr5:117002800-117003000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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