Variant report

Variant	rs10063674
Chromosome Location	chr5:177854604-177854605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10050728	1.00[ASN][1000 genomes]
rs10063441	1.00[ASN][1000 genomes]
rs11956256	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956284	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956401	0.84[CEU][hapmap]
rs28657401	1.00[ASN][1000 genomes]
rs28673403	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4357054	1.00[ASN][1000 genomes]
rs4541676	1.00[ASN][1000 genomes]
rs4976725	1.00[ASN][1000 genomes]
rs59697910	1.00[ASN][1000 genomes]
rs60667997	1.00[ASN][1000 genomes]
rs62389411	1.00[ASN][1000 genomes]
rs62389412	1.00[ASN][1000 genomes]
rs62389413	1.00[ASN][1000 genomes]
rs6422348	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6892799	0.91[EUR][1000 genomes]
rs7711430	0.87[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv883213	chr5:177811754-177947771	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177840000-177855000	Weak transcription	Right Atrium	heart
2	chr5:177846600-177856000	Weak transcription	Gastric	stomach
3	chr5:177848800-177859800	Strong transcription	Thymus	Thymus
4	chr5:177849400-177855000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:177849600-177855400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:177849600-177856000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:177850600-177855000	Weak transcription	Left Ventricle	heart
8	chr5:177850800-177855200	Weak transcription	Spleen	Spleen
9	chr5:177850800-177855600	Weak transcription	Fetal Heart	heart
10	chr5:177851400-177855600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:177851600-177855000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:177852000-177855000	Weak transcription	Placenta	Placenta
13	chr5:177852000-177855800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:177853000-177857200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:177853200-177858400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:177853400-177854800	Weak transcription	Fetal Thymus	thymus
17	chr5:177853400-177856400	Enhancers	Fetal Brain Male	brain
18	chr5:177853600-177855000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:177853600-177855400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:177853600-177856600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:177854000-177855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:177854200-177856400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr5:177854200-177857600	Enhancers	Fetal Lung	lung
24	chr5:177854400-177855800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr5:177854400-177856400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:177854400-177856400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr5:177854400-177856600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr5:177854400-177856600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:177854400-177856800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:177854400-177856800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:177854400-177857200	Enhancers	Fetal Stomach	stomach
32	chr5:177854400-177857400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:177854600-177855000	Enhancers	Fetal Kidney	kidney
34	chr5:177854600-177855200	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links