Variant report

Variant	rs1006536
Chromosome Location	chr7:112132722-112132723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112128570..112130551-chr7:112131471..112133164,2	K562	blood:
2	chr7:112131612..112134582-chr7:112135231..112138012,2	K562	blood:
3	chr7:112121639..112123962-chr7:112132170..112134503,2	K562	blood:
4	chr7:112110260..112112792-chr7:112132236..112134021,2	K562	blood:
5	chr7:112126727..112128231-chr7:112130994..112133220,2	K562	blood:
6	chr7:112122370..112125277-chr7:112129500..112134032,5	K562	blood:

Variant related genes	Relation type
ENSG00000181016	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10236486	0.92[ASN][1000 genomes]
rs10953714	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs10953715	0.84[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.82[ASN][1000 genomes]
rs11767398	1.00[CEU][hapmap]
rs12112022	0.82[AMR][1000 genomes]
rs2396550	0.93[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2396551	0.84[CEU][hapmap];0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs3095030	0.92[ASN][1000 genomes]
rs3095031	0.93[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs3095033	0.92[ASN][1000 genomes]
rs3095034	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs3128377	0.92[ASN][1000 genomes]
rs3128378	0.93[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv1030033	chr7:112092709-112140430	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112100600-112135000	Weak transcription	Esophagus	oesophagus
2	chr7:112118800-112141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:112121000-112136200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:112123200-112135400	Weak transcription	Fetal Lung	lung
5	chr7:112125200-112134600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:112125200-112138200	Weak transcription	Pancreas	Pancrea
7	chr7:112125400-112134800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:112125400-112135800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:112125400-112142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:112125400-112143200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:112125600-112133000	Weak transcription	Osteobl	bone
12	chr7:112125600-112134000	Weak transcription	NH-A	brain
13	chr7:112125600-112134800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:112125600-112135000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:112125800-112135800	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:112126000-112133400	Weak transcription	Brain Anterior Caudate	brain
17	chr7:112126000-112133400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:112126000-112133400	Weak transcription	HSMMtube	muscle
19	chr7:112126000-112135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:112126000-112135000	Weak transcription	Brain Angular Gyrus	brain
21	chr7:112126000-112136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:112126000-112143600	Weak transcription	Right Ventricle	heart
23	chr7:112127600-112133400	Weak transcription	Brain Substantia Nigra	brain
24	chr7:112127600-112135800	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:112127800-112133400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:112127800-112134800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:112128000-112133400	Weak transcription	Left Ventricle	heart
28	chr7:112128000-112134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:112128200-112133400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:112128400-112133400	Weak transcription	Fetal Heart	heart
31	chr7:112128400-112145600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:112130200-112135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:112130200-112142200	Weak transcription	Adipose Nuclei	Adipose
34	chr7:112130400-112134400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:112130400-112135000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:112130400-112135600	Weak transcription	Liver	Liver
37	chr7:112130400-112135800	Weak transcription	Aorta	Aorta
38	chr7:112130600-112133400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr7:112131200-112133000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:112131600-112133600	Enhancers	Fetal Intestine Large	intestine
41	chr7:112132000-112132800	Enhancers	Duodenum Mucosa	Duodenum
42	chr7:112132000-112132800	Enhancers	HepG2	liver
43	chr7:112132200-112132800	Enhancers	Fetal Intestine Small	intestine
44	chr7:112132600-112132800	Enhancers	Psoas Muscle	Psoas
45	chr7:112132600-112133200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:112132600-112133200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links