Variant report

Variant	rs10065401
Chromosome Location	chr5:116752778-116752779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10075994	0.80[CEU][hapmap]
rs1030461	0.84[ASN][1000 genomes]
rs1030462	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13164082	0.85[EUR][1000 genomes]
rs1428048	0.84[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2560583	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2560586	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs2624463	0.80[ASN][1000 genomes]
rs2900102	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4455596	0.81[CEU][hapmap]
rs4920870	0.85[EUR][1000 genomes]
rs6875942	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7714703	0.86[EUR][1000 genomes]
rs7732741	0.87[CEU][hapmap]
rs950074	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116750600-116753200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:116752600-116752800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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