Variant report

Variant	rs10067881
Chromosome Location	chr5:95162475-95162476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95160713..95163370-chr5:95164070..95166105,2	MCF-7	breast:
2	chr5:95162262..95164257-chr5:95169999..95171533,2	MCF-7	breast:
3	chr5:95156277..95158130-chr5:95161683..95164482,2	K562	blood:

Variant related genes	Relation type
ENSG00000173221	Chromatin interaction
ENSG00000251000	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10059130	1.00[ASN][1000 genomes]
rs10059138	1.00[ASN][1000 genomes]
rs10059245	1.00[ASN][1000 genomes]
rs10074815	0.94[ASN][1000 genomes]
rs10515230	1.00[ASN][1000 genomes]
rs57148774	0.94[ASN][1000 genomes]
rs6556884	1.00[ASN][1000 genomes]
rs6556885	1.00[ASN][1000 genomes]
rs6556886	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556891	0.94[ASN][1000 genomes]
rs67807434	1.00[ASN][1000 genomes]
rs68044534	0.94[ASN][1000 genomes]
rs68095140	1.00[ASN][1000 genomes]
rs72785409	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv462255	chr5:95142817-95168155	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv598961	chr5:95142817-95168155	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv882389	chr5:95144952-95173887	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10067881	AC008592.3	cis	Whole Blood	GTEx

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95158800-95164800	Enhancers	Fetal Intestine Large	intestine
2	chr5:95159800-95162600	Enhancers	Liver	Liver
3	chr5:95159800-95164800	Enhancers	Fetal Intestine Small	intestine
4	chr5:95159800-95169800	Weak transcription	Fetal Kidney	kidney
5	chr5:95160200-95164800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:95160200-95169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:95160400-95162600	Enhancers	HepG2	liver
8	chr5:95160600-95162800	Weak transcription	Adipose Nuclei	Adipose
9	chr5:95160600-95162800	Weak transcription	Stomach Mucosa	stomach
10	chr5:95160600-95163200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:95160600-95163400	Weak transcription	Colonic Mucosa	Colon
12	chr5:95160600-95168800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:95160600-95170000	Weak transcription	Right Atrium	heart
14	chr5:95160600-95170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:95160800-95162800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:95160800-95162800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr5:95160800-95163000	Weak transcription	Lung	lung
18	chr5:95160800-95163000	Weak transcription	Right Ventricle	heart
19	chr5:95160800-95166400	Weak transcription	Gastric	stomach
20	chr5:95160800-95168000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:95160800-95168200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:95160800-95168800	Weak transcription	Placenta	Placenta
23	chr5:95160800-95169000	Weak transcription	Psoas Muscle	Psoas
24	chr5:95160800-95169800	Weak transcription	Fetal Heart	heart
25	chr5:95160800-95169800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:95161400-95163800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:95161400-95168400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:95161600-95171400	Weak transcription	Small Intestine	intestine
29	chr5:95161800-95162800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:95161800-95163000	Weak transcription	A549	lung
31	chr5:95161800-95163200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:95161800-95163600	Weak transcription	Dnd41	blood
33	chr5:95161800-95163800	Weak transcription	Spleen	Spleen
34	chr5:95161800-95164400	Weak transcription	Pancreas	Pancrea
35	chr5:95161800-95165000	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr5:95161800-95165200	Weak transcription	Colon Smooth Muscle	Colon
37	chr5:95161800-95168000	Weak transcription	GM12878-XiMat	blood
38	chr5:95161800-95168800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr5:95161800-95169800	Weak transcription	Thymus	Thymus
40	chr5:95161800-95170000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:95162000-95163000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr5:95162000-95163200	Weak transcription	Primary T cells from cord blood	blood
43	chr5:95162000-95168000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr5:95162000-95168200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:95162200-95162600	Weak transcription	Primary B cells from cord blood	blood
46	chr5:95162200-95162600	Weak transcription	K562	blood
47	chr5:95162200-95163200	Weak transcription	Fetal Thymus	thymus
48	chr5:95162200-95164000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr5:95162400-95162800	Enhancers	Duodenum Mucosa	Duodenum
50	chr5:95162400-95164600	Enhancers	Rectal Mucosa Donor 31	rectum

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