Variant report

Variant	rs10067941
Chromosome Location	chr5:95186689-95186690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10055875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10079710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12520664	0.97[ASN][1000 genomes]
rs2161312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2546196	0.97[ASN][1000 genomes]
rs3797207	0.85[EUR][1000 genomes]
rs41470049	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6420125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6556887	0.88[ASN][1000 genomes]
rs6556888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6882301	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883552	0.97[ASN][1000 genomes]
rs6884979	0.93[ASN][1000 genomes]
rs7702848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7703084	0.88[ASN][1000 genomes]
rs7708375	0.97[ASN][1000 genomes]
rs7716279	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7719227	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1019566	chr5:95180352-95300677	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95177800-95192200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:95178400-95188400	Weak transcription	Stomach Mucosa	stomach
3	chr5:95179000-95206000	Weak transcription	Spleen	Spleen
4	chr5:95182800-95191000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:95182800-95191000	Weak transcription	Brain Substantia Nigra	brain
6	chr5:95182800-95191200	Weak transcription	Psoas Muscle	Psoas
7	chr5:95182800-95191800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:95182800-95192200	Weak transcription	Esophagus	oesophagus
9	chr5:95183600-95186800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:95185000-95188400	Weak transcription	Fetal Heart	heart
11	chr5:95185000-95192400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:95185000-95193000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:95185200-95192400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:95185600-95186800	Enhancers	Adipose Nuclei	Adipose
15	chr5:95185800-95186800	Enhancers	Pancreas	Pancrea
16	chr5:95186000-95186800	Flanking Active TSS	Liver	Liver
17	chr5:95186000-95189200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:95186400-95188400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:95186400-95191000	Weak transcription	Placenta	Placenta
20	chr5:95186400-95194200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:95186600-95186800	Enhancers	Right Ventricle	heart
22	chr5:95186600-95186800	Enhancers	HepG2	liver
23	chr5:95186600-95188400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr5:95186600-95189200	Weak transcription	Right Atrium	heart
25	chr5:95186600-95191000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:95186600-95191200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:95186600-95191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:95186600-95192200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:95186600-95192200	Weak transcription	Lung	lung
30	chr5:95186600-95192200	Weak transcription	Ovary	ovary
31	chr5:95186600-95192800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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