Variant report

Variant	rs10068349
Chromosome Location	chr5:116653901-116653902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116640598..116642872-chr5:116653886..116656099,2	MCF-7	breast:
2	chr5:116649673..116651747-chr5:116653579..116656311,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10068673	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10079309	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10085046	0.83[AFR][1000 genomes]
rs10463690	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10478339	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11241420	0.83[ASN][1000 genomes]
rs12652528	0.85[ASN][1000 genomes]
rs1565889	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565890	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565892	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976282	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036024	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2220858	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2900101	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4331937	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4435900	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6595028	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7712165	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7730432	0.83[AFR][1000 genomes]
rs7732328	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7735145	0.89[ASN][1000 genomes]
rs7735868	0.89[ASN][1000 genomes]
rs7736463	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599486	chr5:116607979-116669707	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116652800-116654400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:116653000-116654000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:116653000-116654400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:116653400-116654000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:116653400-116654200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:116653400-116654600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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