Variant report

Variant	rs10068651
Chromosome Location	chr5:75743532-75743533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10043040	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10044351	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10044370	0.96[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10044373	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10068074	0.83[EUR][1000 genomes]
rs10068404	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10070688	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10072221	0.96[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10073228	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10073282	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10073382	0.96[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs10073448	0.82[EUR][1000 genomes]
rs10077372	0.96[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10079393	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10213849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11740038	0.89[CEU][hapmap]
rs11743541	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11749318	0.96[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12523532	0.96[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs13175420	0.81[EUR][1000 genomes]
rs3886043	0.89[CEU][hapmap]
rs4130148	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs4296785	0.80[YRI][hapmap]
rs4615280	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59428516	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60570368	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6453217	0.92[CEU][hapmap]
rs6865628	0.96[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6887962	0.96[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs7706078	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7706926	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:75722800-75767800	Weak transcription	Ovary	ovary
3	chr5:75724200-75748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:75726200-75744600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:75729400-75751600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:75732000-75745800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:75734800-75745600	Weak transcription	Thymus	Thymus
8	chr5:75734800-75745800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:75735800-75745000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:75736400-75747000	Weak transcription	GM12878-XiMat	blood
11	chr5:75736600-75743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:75737000-75744800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:75737000-75745200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:75737800-75743800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:75737800-75744800	Weak transcription	Fetal Thymus	thymus
16	chr5:75737800-75747000	Weak transcription	Gastric	stomach
17	chr5:75737800-75751400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:75738000-75744800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:75738400-75749200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:75738600-75744200	Weak transcription	Stomach Mucosa	stomach
21	chr5:75738600-75744400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:75739200-75744800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:75739800-75744000	Weak transcription	Liver	Liver
24	chr5:75739800-75746000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:75740000-75745200	Weak transcription	Brain Germinal Matrix	brain
26	chr5:75740200-75743800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr5:75740800-75745800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:75741000-75745600	Strong transcription	Primary B cells from cord blood	blood
29	chr5:75741000-75746600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:75741000-75747000	Weak transcription	Spleen	Spleen
31	chr5:75741600-75744200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr5:75741600-75745000	Strong transcription	Placenta	Placenta
33	chr5:75741800-75744000	Strong transcription	Primary T cells from cord blood	blood
34	chr5:75742000-75757600	Weak transcription	Lung	lung
35	chr5:75742400-75753000	Weak transcription	Fetal Intestine Small	intestine
36	chr5:75742600-75743800	Genic enhancers	Fetal Stomach	stomach
37	chr5:75742600-75753800	Weak transcription	Colonic Mucosa	Colon
38	chr5:75742800-75744000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:75742800-75744000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr5:75742800-75745200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:75743000-75745600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:75743000-75747600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr5:75743000-75748400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:75743000-75751400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr5:75743000-75751800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:75743200-75745600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
47	chr5:75743200-75747400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr5:75743400-75744400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:75743400-75744400	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr5:75743400-75744800	Strong transcription	Primary hematopoietic stem cells	blood

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