Variant report
| Variant | rs10068673 |
|---|---|
| Chromosome Location | chr5:116641123-116641124 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:116640598..116642872-chr5:116653886..116656099,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL35AP15 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10066055 | 0.81[EUR][1000 genomes] |
| rs10068349 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10079309 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10085046 | 0.81[EUR][1000 genomes] |
| rs10463690 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10478339 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12652528 | 0.81[ASN][1000 genomes] |
| rs1389935 | 0.81[EUR][1000 genomes] |
| rs1494821 | 0.80[EUR][1000 genomes] |
| rs1494823 | 0.80[EUR][1000 genomes] |
| rs1565889 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1565890 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1565892 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1908408 | 0.81[EUR][1000 genomes] |
| rs1908409 | 0.81[EUR][1000 genomes] |
| rs1976282 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2036024 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2220858 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2900101 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4331937 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4435900 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6595026 | 0.81[EUR][1000 genomes] |
| rs6595028 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7712165 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7729749 | 0.81[EUR][1000 genomes] |
| rs7730432 | 0.81[EUR][1000 genomes] |
| rs7732328 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7735145 | 0.85[ASN][1000 genomes] |
| rs7735868 | 0.85[ASN][1000 genomes] |
| rs7736463 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015741 | chr5:116525936-116665270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv599486 | chr5:116607979-116669707 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
