Variant report

Variant	rs10071998
Chromosome Location	chr5:37780861-37780862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10055929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058348	0.83[AMR][1000 genomes]
rs10064268	0.83[AMR][1000 genomes]
rs10067274	0.83[AMR][1000 genomes]
rs10069946	0.83[AMR][1000 genomes]
rs10072096	0.83[AMR][1000 genomes]
rs10072199	0.83[AMR][1000 genomes]
rs10074395	0.83[AMR][1000 genomes]
rs10075048	0.83[AMR][1000 genomes]
rs11954051	1.00[AMR][1000 genomes]
rs11957206	1.00[AMR][1000 genomes]
rs11957694	0.83[AMR][1000 genomes]
rs13358095	0.83[AMR][1000 genomes]
rs13359573	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436949	0.83[AMR][1000 genomes]
rs2972940	0.83[AMR][1000 genomes]
rs2973065	0.83[AMR][1000 genomes]
rs2973071	0.83[AMR][1000 genomes]
rs2973072	0.83[AMR][1000 genomes]
rs34034635	1.00[AMR][1000 genomes]
rs36010631	0.85[AMR][1000 genomes]
rs73748981	0.85[AMR][1000 genomes]
rs7709443	1.00[AMR][1000 genomes]
rs7730584	0.83[AMR][1000 genomes]
rs7737381	0.83[AMR][1000 genomes]
rs983657	0.83[AMR][1000 genomes]
rs983658	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37778000-37785000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:37780800-37781800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links