Variant report

Variant	rs10072072
Chromosome Location	chr5:118601865-118601866
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118415616..118417740-chr5:118600067..118602902,2	MCF-7	breast:
2	chr5:118597056..118599082-chr5:118600428..118603358,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035593	0.93[EUR][1000 genomes]
rs10037918	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10051559	1.00[CEU][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs10075997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11241487	1.00[CEU][hapmap]
rs1394628	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1504974	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1504975	0.82[ASW][hapmap];1.00[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[EUR][1000 genomes]
rs1504976	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1553542	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17145004	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17145010	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17145018	0.91[ASN][1000 genomes]
rs17145034	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1857771	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1910788	0.85[EUR][1000 genomes]
rs2055620	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2197797	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2271059	1.00[CEU][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs2404397	1.00[CEU][hapmap];0.83[TSI][hapmap];0.95[EUR][1000 genomes]
rs2896839	1.00[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs2896840	1.00[CEU][hapmap];0.83[TSI][hapmap];0.98[EUR][1000 genomes]
rs3797337	1.00[CEU][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs3822517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3992620	1.00[CEU][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs4421136	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6869894	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6880106	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs73242994	0.88[EUR][1000 genomes]
rs73242996	0.88[EUR][1000 genomes]
rs73247091	0.91[ASN][1000 genomes]
rs73247093	0.91[ASN][1000 genomes]
rs7719887	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7736744	0.95[EUR][1000 genomes]
rs9327092	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1019788	chr5:118488501-118607405	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv537882	chr5:118488501-118607405	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118592200-118603600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:118598800-118603200	Enhancers	Dnd41	blood
3	chr5:118599000-118602200	Enhancers	Fetal Thymus	thymus
4	chr5:118599400-118603400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:118599800-118602000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:118600000-118603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:118600000-118603200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:118600400-118603200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:118600600-118603400	Weak transcription	HSMMtube	muscle
10	chr5:118600800-118603600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:118601000-118604000	Weak transcription	Fetal Heart	heart
12	chr5:118601200-118602400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:118601200-118603200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr5:118601400-118602000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr5:118601400-118603600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:118601800-118602400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:118601800-118603200	Enhancers	K562	blood
18	chr5:118601800-118603800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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