Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37774495..37776332-chr5:37779202..37780896,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10055929	0.83[AMR][1000 genomes]
rs10058348	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10064268	1.00[AMR][1000 genomes]
rs10067274	1.00[AMR][1000 genomes]
rs10069946	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10071998	0.83[AMR][1000 genomes]
rs10072096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074395	1.00[AMR][1000 genomes]
rs10075048	1.00[AMR][1000 genomes]
rs11954051	0.83[AMR][1000 genomes]
rs11957206	0.83[AMR][1000 genomes]
rs11957694	1.00[AMR][1000 genomes]
rs13358095	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359573	0.83[AMR][1000 genomes]
rs13436949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2972940	1.00[AMR][1000 genomes]
rs2973065	1.00[AMR][1000 genomes]
rs2973071	1.00[AMR][1000 genomes]
rs2973072	1.00[AMR][1000 genomes]
rs2973073	0.83[AMR][1000 genomes]
rs34034635	0.83[AMR][1000 genomes]
rs6863547	1.00[MEX][hapmap]
rs6898271	1.00[MEX][hapmap]
rs7708708	1.00[MEX][hapmap]
rs7709443	0.83[AMR][1000 genomes]
rs7710547	1.00[MEX][hapmap]
rs7723792	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7730584	1.00[AMR][1000 genomes]
rs7737381	1.00[AMR][1000 genomes]
rs9292657	1.00[MEX][hapmap]
rs9292667	0.83[AMR][1000 genomes]
rs983657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs983658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37773200-37776000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:37773200-37777000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:37773800-37776200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:37774000-37776000	Weak transcription	Osteobl	bone
5	chr5:37774000-37777200	Weak transcription	NH-A	brain

Quick Search: