Variant report

Variant	rs10073933
Chromosome Location	chr5:97665008-97665009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10036788	0.89[AMR][1000 genomes]
rs10036839	0.89[AMR][1000 genomes]
rs10050404	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10074663	0.87[EUR][1000 genomes]
rs11953877	0.82[AMR][1000 genomes]
rs11953894	0.82[AMR][1000 genomes]
rs11954911	0.82[AMR][1000 genomes]
rs11955115	0.82[AMR][1000 genomes]
rs11955987	0.82[AMR][1000 genomes]
rs12517476	0.82[EUR][1000 genomes]
rs12520566	0.82[EUR][1000 genomes]
rs1378443	0.87[EUR][1000 genomes]
rs1378445	0.87[EUR][1000 genomes]
rs1455424	0.86[AMR][1000 genomes]
rs1455425	0.89[AMR][1000 genomes]
rs1455432	0.82[EUR][1000 genomes]
rs17165878	0.82[AMR][1000 genomes]
rs2368550	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35382921	0.82[EUR][1000 genomes]
rs4703347	0.82[EUR][1000 genomes]
rs59277777	0.82[EUR][1000 genomes]
rs59423561	0.82[AMR][1000 genomes]
rs60702807	0.87[EUR][1000 genomes]
rs62369875	0.82[EUR][1000 genomes]
rs6594645	0.82[EUR][1000 genomes]
rs6594647	0.82[EUR][1000 genomes]
rs6596727	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6596743	0.89[AMR][1000 genomes]
rs6862206	0.89[AMR][1000 genomes]
rs6863762	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6870895	0.82[EUR][1000 genomes]
rs6871138	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6872831	0.85[AMR][1000 genomes]
rs6877032	0.82[AMR][1000 genomes]
rs6882939	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6887168	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73159226	0.82[AMR][1000 genomes]
rs73159258	0.82[EUR][1000 genomes]
rs7702659	0.82[EUR][1000 genomes]
rs7702702	0.83[EUR][1000 genomes]
rs7718848	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7734263	0.82[EUR][1000 genomes]
rs7734271	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97660000-97669800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:97663800-97669600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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