Variant report
| Variant | rs1007453 |
|---|---|
| Chromosome Location | chr5:98319067-98319068 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:98261777..98266971-chr5:98317922..98324645,8 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248489 | Chromatin interaction |
| ENSG00000153922 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10515285 | 1.00[ASW][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs17166461 | 1.00[ASW][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs17166471 | 0.85[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs35394679 | 1.00[ASW][hapmap] |
| rs3860806 | 0.85[AFR][1000 genomes] |
| rs55654090 | 0.86[AFR][1000 genomes] |
| rs57249217 | 0.88[AFR][1000 genomes] |
| rs57253975 | 0.94[AFR][1000 genomes] |
| rs58477983 | 0.86[AFR][1000 genomes] |
| rs60298381 | 0.82[AFR][1000 genomes] |
| rs61515191 | 0.94[AFR][1000 genomes] |
| rs6864720 | 1.00[ASW][hapmap] |
| rs731496 | 0.88[AFR][1000 genomes] |
| rs73155434 | 0.81[AFR][1000 genomes] |
| rs73155446 | 0.88[AFR][1000 genomes] |
| rs73155478 | 0.94[AFR][1000 genomes] |
| rs73155484 | 0.96[AFR][1000 genomes] |
| rs73155486 | 0.87[AFR][1000 genomes] |
| rs73157407 | 0.86[AFR][1000 genomes] |
| rs73157426 | 0.86[AFR][1000 genomes] |
| rs73776061 | 0.81[AFR][1000 genomes] |
| rs7707061 | 1.00[ASW][hapmap] |
| rs7732611 | 0.90[AFR][1000 genomes] |
| rs963689 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1826071 | chr5:98312447-98358852 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1827754 | chr5:98312447-98358852 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv1837772 | chr5:98312447-98358852 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1838335 | chr5:98312447-98358852 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv1845131 | chr5:98312447-98358852 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv4930 | chr5:98318768-98350644 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98318800-98319200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr5:98319000-98321400 | Weak transcription | K562 | blood |
