Variant report
| Variant | rs10074665 |
|---|---|
| Chromosome Location | chr5:116640622-116640623 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:116640598..116642872-chr5:116653886..116656099,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL35AP15 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10070521 | 0.81[EUR][1000 genomes] |
| rs10477560 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10478340 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10478341 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10478342 | 0.87[EUR][1000 genomes] |
| rs1494827 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1494828 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1845562 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1845563 | 0.81[EUR][1000 genomes] |
| rs1908407 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1979732 | 0.86[EUR][1000 genomes] |
| rs2220859 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2416466 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34479127 | 0.82[EUR][1000 genomes] |
| rs4580811 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7708893 | 0.87[EUR][1000 genomes] |
| rs7711973 | 0.86[EUR][1000 genomes] |
| rs7716765 | 0.84[EUR][1000 genomes] |
| rs7737236 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015741 | chr5:116525936-116665270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv599486 | chr5:116607979-116669707 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
