Variant report

Variant	rs10075091
Chromosome Location	chr5:124991117-124991118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs59958060	1.00[EUR][1000 genomes]
rs60202964	1.00[EUR][1000 genomes]
rs73305337	1.00[EUR][1000 genomes]
rs73305339	1.00[EUR][1000 genomes]
rs73305342	1.00[EUR][1000 genomes]
rs73305345	1.00[EUR][1000 genomes]
rs73305365	1.00[EUR][1000 genomes]
rs73305368	1.00[EUR][1000 genomes]
rs73305401	1.00[EUR][1000 genomes]
rs73307316	1.00[EUR][1000 genomes]
rs73312635	1.00[EUR][1000 genomes]
rs73314079	1.00[EUR][1000 genomes]
rs73314081	1.00[EUR][1000 genomes]
rs73314102	1.00[EUR][1000 genomes]
rs73316199	1.00[EUR][1000 genomes]
rs73318103	1.00[EUR][1000 genomes]
rs73318104	1.00[EUR][1000 genomes]
rs73318158	1.00[EUR][1000 genomes]
rs73318193	1.00[EUR][1000 genomes]
rs7708577	1.00[EUR][1000 genomes]
rs7732317	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv534468	chr5:124943170-125634960	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv462441	chr5:124969756-125034613	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599659	chr5:124969756-125034613	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124975400-124994800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124989600-124991800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:124989600-124996800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:124990000-124992000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:124990000-124995200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:124990200-124991200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:124990200-124991600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:124990200-124991600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:124990200-124991800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:124990400-124991400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:124990400-124991800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:124990400-124993200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:124990600-124992800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:124990800-124991200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:124991000-124991200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:124991000-124991200	Enhancers	Brain Germinal Matrix	brain
17	chr5:124991000-124992000	Enhancers	Brain Anterior Caudate	brain
18	chr5:124991000-124992000	Enhancers	Brain Substantia Nigra	brain
19	chr5:124991000-124993200	Weak transcription	Brain Angular Gyrus	brain

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