Variant report

Variant	rs10076590
Chromosome Location	chr5:97763213-97763214
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10035546	0.90[ASN][1000 genomes]
rs10036326	0.81[ASN][1000 genomes]
rs10050404	1.00[CEU][hapmap]
rs10050543	0.90[ASN][1000 genomes]
rs11959995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516667	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12517476	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12519087	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12520566	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12523434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455426	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1455432	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17165943	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35382921	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4702968	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4702970	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703066	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703070	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4703347	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703354	0.90[ASN][1000 genomes]
rs59277777	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60249733	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594647	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6596727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs6863762	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6870895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6872708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6885408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6890493	0.90[ASN][1000 genomes]
rs73143833	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73159258	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702659	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702702	0.90[ASN][1000 genomes]
rs7714842	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734263	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734271	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv882409	chr5:97761687-97817930	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97755200-97763800	Weak transcription	Small Intestine	intestine
2	chr5:97755200-97764400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:97761200-97764400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:97761200-97764400	Enhancers	NHDF-Ad	bronchial
5	chr5:97761400-97767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:97761600-97763400	Weak transcription	HSMM	muscle
7	chr5:97761600-97764400	Weak transcription	Osteobl	bone
8	chr5:97761800-97763800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:97761800-97764800	Weak transcription	HSMMtube	muscle
10	chr5:97762000-97763400	Weak transcription	NHLF	lung
11	chr5:97762000-97764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:97762200-97767000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:97762400-97766600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:97762600-97763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:97762600-97763800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:97762600-97764600	Weak transcription	Fetal Stomach	stomach
17	chr5:97762800-97763800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:97763000-97764400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:97763200-97763400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:97763200-97765200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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