Variant report

Variant	rs10077372
Chromosome Location	chr5:75720649-75720650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75697668..75699734-chr5:75720568..75722803,2	K562	blood:
2	chr5:75717306..75720750-chr5:75722224..75725340,4	K562	blood:

Variant related genes	Relation type
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10043040	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044351	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044370	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065322	0.91[EUR][1000 genomes]
rs10068074	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068404	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10068651	0.96[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10070688	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072221	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073282	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073448	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079393	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10213849	0.96[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10462539	0.89[EUR][1000 genomes]
rs10462540	0.90[EUR][1000 genomes]
rs11738470	0.89[EUR][1000 genomes]
rs11740038	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11743541	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11744637	0.91[EUR][1000 genomes]
rs11747990	0.91[EUR][1000 genomes]
rs11749318	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12523532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13175420	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13357820	0.89[EUR][1000 genomes]
rs28386181	0.90[EUR][1000 genomes]
rs3886042	0.90[EUR][1000 genomes]
rs3886043	0.85[CEU][hapmap];0.84[MEX][hapmap];0.90[EUR][1000 genomes]
rs4254886	0.91[EUR][1000 genomes]
rs4615280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55995866	0.90[EUR][1000 genomes]
rs56189196	0.88[EUR][1000 genomes]
rs59428516	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60570368	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453217	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs6865628	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895725	0.89[EUR][1000 genomes]
rs7706078	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7706926	0.85[CEU][hapmap];0.88[MEX][hapmap];0.91[EUR][1000 genomes]
rs7707426	0.91[EUR][1000 genomes]
rs7718641	0.91[EUR][1000 genomes]
rs7731240	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75701000-75721600	Weak transcription	Fetal Stomach	stomach
2	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:75707000-75727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:75709800-75727200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:75710200-75720800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
8	chr5:75717400-75720800	Weak transcription	Gastric	stomach
9	chr5:75717400-75722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:75718000-75722600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:75718400-75721600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:75718400-75725800	Weak transcription	HepG2	liver
13	chr5:75718600-75720800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:75718600-75721600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:75718600-75722000	Weak transcription	Brain Germinal Matrix	brain
16	chr5:75718600-75722000	Weak transcription	Stomach Mucosa	stomach
17	chr5:75718600-75722400	Weak transcription	Fetal Intestine Small	intestine
18	chr5:75718600-75723600	Weak transcription	Small Intestine	intestine
19	chr5:75718800-75720800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:75718800-75721600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:75719200-75724800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:75719400-75721800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:75719400-75722400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr5:75719800-75720800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:75719800-75721200	Weak transcription	Fetal Brain Female	brain
26	chr5:75719800-75722000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:75720200-75721600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr5:75720200-75721800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr5:75720200-75722000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:75720200-75722400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr5:75720400-75720800	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr5:75720400-75721200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr5:75720400-75722000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr5:75720400-75722800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr5:75720400-75722800	Enhancers	Primary T cells fromperipheralblood	blood
36	chr5:75720400-75722800	Enhancers	Liver	Liver
37	chr5:75720400-75723200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:75720400-75724000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:75720400-75724000	Enhancers	Placenta	Placenta
40	chr5:75720400-75724200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:75720400-75724200	Enhancers	Primary hematopoietic stem cells	blood
42	chr5:75720600-75720800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr5:75720600-75720800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:75720600-75720800	Enhancers	Fetal Intestine Large	intestine
45	chr5:75720600-75721000	Enhancers	Adipose Nuclei	Adipose
46	chr5:75720600-75721000	Enhancers	Lung	lung
47	chr5:75720600-75721000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr5:75720600-75721400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr5:75720600-75721600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr5:75720600-75721600	Enhancers	Fetal Lung	lung

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