Variant report

Variant	rs10077621
Chromosome Location	chr5:97652274-97652275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13436504	0.92[ASN][1000 genomes]
rs28368620	0.93[EUR][1000 genomes]
rs61740530	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97646200-97652400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:97646200-97652600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:97646200-97655200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:97646400-97655600	Weak transcription	Brain Substantia Nigra	brain
5	chr5:97648600-97652600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:97651000-97653600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:97651200-97656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:97651200-97656000	Weak transcription	Brain Anterior Caudate	brain
9	chr5:97651800-97652400	Weak transcription	NHLF	lung
10	chr5:97652000-97652400	Weak transcription	NHDF-Ad	bronchial
11	chr5:97652200-97652400	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links