Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036337	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043080	1.00[CHB][hapmap]
rs10054930	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10060241	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060250	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10074010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12109171	1.00[CHB][hapmap]
rs13356315	0.86[ASN][1000 genomes]
rs1358224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345486	0.93[ASN][1000 genomes]
rs17403118	0.93[ASN][1000 genomes]
rs34279532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850728	0.93[ASN][1000 genomes]
rs56819255	1.00[ASN][1000 genomes]
rs60808813	1.00[ASN][1000 genomes]
rs62378112	0.86[ASN][1000 genomes]
rs62380274	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73262789	0.86[ASN][1000 genomes]
rs7707471	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9327047	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116988800-116993200	Weak transcription	Fetal Brain Female	brain
2	chr5:116993000-116993400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:116993000-116993800	Enhancers	Brain Germinal Matrix	brain

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