Variant report

Variant	rs10081146
Chromosome Location	chr6:56076740-56076741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11970688	0.84[AMR][1000 genomes]
rs1320996	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1474698	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1925145	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1925148	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1925152	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2223598	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3846926	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3899394	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4140574	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4140575	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4310058	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4712116	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4712120	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4715583	0.84[AMR][1000 genomes]
rs4715584	0.84[AMR][1000 genomes]
rs4715590	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715594	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715596	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6459130	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6930358	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936386	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7741903	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7776118	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs926534	0.80[AMR][1000 genomes]
rs926535	0.80[AMR][1000 genomes]
rs9296832	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9296833	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349804	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9357897	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9367678	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396183	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9475586	0.82[AMR][1000 genomes]
rs9475641	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung

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