Variant report

Variant	rs1008227
Chromosome Location	chr6:38817348-38817349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1018437	0.91[EUR][1000 genomes]
rs1564377	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1629877	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678695	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678696	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678697	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1678698	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678699	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678700	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678701	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678702	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678703	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678706	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678707	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678708	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678709	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1678712	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1678717	0.86[EUR][1000 genomes]
rs1678742	0.92[EUR][1000 genomes]
rs1738199	0.87[EUR][1000 genomes]
rs1738203	0.86[EUR][1000 genomes]
rs1738211	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1738212	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1738215	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1738216	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1738217	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1738218	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1738219	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2061907	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2179711	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2179712	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2179713	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4501424	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6458073	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6458074	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6458075	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6458076	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6458077	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6458078	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6919465	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6928952	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6934064	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7748684	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7757460	0.87[EUR][1000 genomes]
rs7772148	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296265	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9349100	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369085	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9369087	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9380787	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9380788	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9380789	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9380795	0.86[EUR][1000 genomes]
rs9394544	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9394545	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs984523	0.80[ASN][1000 genomes]
rs984524	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs984525	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv343682	chr6:38817349-38817349	Enhancers Weak transcription	n/a	n/a	n/a	diseases
4	esv2395259	chr6:38817349-38817350	Weak transcription Enhancers	n/a	n/a	n/a	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38804600-38821000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:38812600-38821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:38816800-38818200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:38817200-38818200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:38817200-38818800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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