Variant report

Variant	rs10082673
Chromosome Location	chr11:72113219-72113220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72108026..72111129-chr11:72112803..72115357,3	MCF-7	breast:
2	chr11:72107648..72109723-chr11:72110877..72114081,3	K562	blood:
3	chr11:72110960..72113581-chr11:72114884..72118274,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11235471	1.00[AFR][1000 genomes]
rs11235481	1.00[AFR][1000 genomes]
rs12273286	1.00[AFR][1000 genomes]
rs12285652	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv1000322	chr11:72109327-72116806	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
3	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
5	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:72100400-72117400	Weak transcription	HMEC	breast
9	chr11:72103400-72120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:72103600-72116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:72104200-72113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:72105000-72122200	Weak transcription	GM12878-XiMat	blood
13	chr11:72105400-72124800	Weak transcription	A549	lung
14	chr11:72106000-72115800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr11:72106200-72113600	Weak transcription	NHEK	skin
16	chr11:72106200-72121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:72106200-72121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
19	chr11:72106800-72136800	Weak transcription	NHLF	lung
20	chr11:72107000-72120000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:72107000-72121200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:72107200-72119000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:72107200-72119800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:72107200-72122400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:72107400-72113800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:72107400-72122600	Weak transcription	Brain Germinal Matrix	brain
27	chr11:72107600-72117600	Weak transcription	Brain Angular Gyrus	brain
28	chr11:72107600-72117600	Weak transcription	Stomach Mucosa	stomach
29	chr11:72107600-72118200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:72107600-72119000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:72107600-72121200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:72107600-72122600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:72107600-72122800	Weak transcription	Fetal Brain Female	brain
34	chr11:72107600-72122800	Weak transcription	Right Ventricle	heart
35	chr11:72107600-72125000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:72107800-72115600	Weak transcription	Fetal Brain Male	brain
37	chr11:72107800-72122000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:72107800-72125000	Weak transcription	Fetal Heart	heart
39	chr11:72108000-72114000	Strong transcription	Primary B cells from cord blood	blood
40	chr11:72108000-72122600	Weak transcription	Fetal Lung	lung
41	chr11:72108600-72123600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:72108800-72114200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:72109200-72114200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:72109400-72113600	Weak transcription	Left Ventricle	heart
45	chr11:72109600-72114400	Strong transcription	Primary T cells from cord blood	blood
46	chr11:72109600-72121200	Weak transcription	Fetal Kidney	kidney
47	chr11:72109600-72137000	Weak transcription	Osteobl	bone
48	chr11:72109800-72115000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:72109800-72139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:72110000-72113800	Weak transcription	Pancreas	Pancrea

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