Variant report

Variant	rs10083196
Chromosome Location	chr12:40170531-40170532
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10444571	1.00[CEU][hapmap]
rs10444572	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10784058	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11833798	1.00[CEU][hapmap]
rs4238071	1.00[CEU][hapmap]
rs4238077	0.82[CEU][hapmap]
rs4238078	1.00[CEU][hapmap]
rs4268570	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4334098	1.00[CEU][hapmap]
rs4334099	1.00[CEU][hapmap]
rs4399379	1.00[CEU][hapmap]
rs4427625	1.00[CEU][hapmap]
rs4435073	1.00[CEU][hapmap]
rs4583047	1.00[CEU][hapmap]
rs4639999	1.00[CEU][hapmap]
rs4767953	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4768181	1.00[CEU][hapmap]
rs4768182	1.00[CEU][hapmap]
rs6581325	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6581336	1.00[CEU][hapmap]
rs6581338	1.00[CEU][hapmap]
rs7133037	1.00[CEU][hapmap]
rs7299595	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7300946	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7310917	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7956254	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7961216	1.00[CEU][hapmap]
rs7969296	1.00[CEU][hapmap]
rs7973782	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7975209	1.00[CEU][hapmap]
rs9645805	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1037457	chr12:39898349-40245401	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv541480	chr12:39898349-40245401	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv899024	chr12:40046408-40188870	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1053603	chr12:40082673-40197609	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv427907	chr12:40122713-40199621	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv428280	chr12:40122713-40199621	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40145000-40175000	Weak transcription	Right Ventricle	heart
2	chr12:40153200-40171400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:40156400-40172800	Weak transcription	Fetal Intestine Small	intestine
4	chr12:40158000-40173600	Weak transcription	Aorta	Aorta
5	chr12:40158200-40174400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:40158200-40179000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:40158200-40199000	Weak transcription	Left Ventricle	heart
8	chr12:40161600-40198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr12:40167200-40170800	Weak transcription	Ovary	ovary
10	chr12:40167200-40172800	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:40167800-40170800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links