Variant report

Variant	rs10085098
Chromosome Location	chr5:117017440-117017441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10042602	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10043259	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1027932	chr5:117004237-117061745	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv519949	chr5:117005690-117055145	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117014600-117019200	Enhancers	HSMMtube	muscle
2	chr5:117014800-117019400	Enhancers	Fetal Heart	heart
3	chr5:117015200-117018200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:117016000-117017600	Enhancers	Fetal Muscle Leg	muscle
5	chr5:117016200-117018800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:117016800-117017600	Enhancers	GM12878-XiMat	blood
7	chr5:117017000-117017800	Enhancers	Fetal Kidney	kidney
8	chr5:117017200-117017600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:117017200-117017600	Enhancers	Brain Germinal Matrix	brain
10	chr5:117017200-117019600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:117017400-117017800	Enhancers	Fetal Stomach	stomach
12	chr5:117017400-117017800	Enhancers	Pancreas	Pancrea
13	chr5:117017400-117017800	Enhancers	NHDF-Ad	bronchial
14	chr5:117017400-117018000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:117017400-117018000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links