Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10226989	0.84[ASN][1000 genomes]
rs10258340	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10267013	0.84[ASN][1000 genomes]
rs2005888	0.86[ASN][1000 genomes]
rs28465113	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526655	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4073643	0.94[CEU][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4073894	0.82[CEU][hapmap]
rs4144809	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4571661	0.88[ASN][1000 genomes]
rs57624778	0.82[EUR][1000 genomes]
rs59449150	0.85[EUR][1000 genomes]
rs6944796	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6958846	0.83[ASN][1000 genomes]
rs71562617	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73184012	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73184014	0.81[EUR][1000 genomes]
rs73184016	0.82[EUR][1000 genomes]
rs73184018	0.82[EUR][1000 genomes]
rs741323	0.87[ASN][1000 genomes]
rs9885984	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104493400-104500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:104494000-104502800	Weak transcription	Fetal Intestine Large	intestine
5	chr7:104496800-104500800	Strong transcription	Fetal Intestine Small	intestine
6	chr7:104498800-104500200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:104499400-104501400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:104499400-104501600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:104499400-104501600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:104499400-104501800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:104499400-104502000	Weak transcription	Primary T cells from cord blood	blood
12	chr7:104499400-104502200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:104499400-104502200	Weak transcription	GM12878-XiMat	blood

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