Variant report

Variant	rs10086023
Chromosome Location	chr8:110139850-110139851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10088496	0.82[ASN][1000 genomes]
rs10089544	0.82[ASN][1000 genomes]
rs10091155	0.81[ASN][1000 genomes]
rs10098145	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101048	0.82[ASN][1000 genomes]
rs10101050	0.82[ASN][1000 genomes]
rs10101189	0.82[ASN][1000 genomes]
rs10101520	0.82[ASN][1000 genomes]
rs10505126	0.85[ASN][1000 genomes]
rs10955505	0.85[ASN][1000 genomes]
rs10955508	0.82[ASN][1000 genomes]
rs10955510	0.82[ASN][1000 genomes]
rs10955511	0.81[ASN][1000 genomes]
rs10955512	0.82[ASN][1000 genomes]
rs10955513	0.80[ASN][1000 genomes]
rs11775991	0.82[ASN][1000 genomes]
rs11778370	0.85[ASN][1000 genomes]
rs11785243	0.82[ASN][1000 genomes]
rs11785269	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11985765	0.83[ASN][1000 genomes]
rs11986161	0.82[ASN][1000 genomes]
rs11992816	0.83[ASN][1000 genomes]
rs11994164	0.82[ASN][1000 genomes]
rs11994227	0.82[ASN][1000 genomes]
rs11995419	0.81[ASN][1000 genomes]
rs11997974	0.82[ASN][1000 genomes]
rs12542811	0.82[ASN][1000 genomes]
rs12542959	0.82[ASN][1000 genomes]
rs12543246	0.86[ASN][1000 genomes]
rs12544150	0.82[ASN][1000 genomes]
rs12544462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544503	0.82[ASN][1000 genomes]
rs12549347	0.82[ASN][1000 genomes]
rs12549397	0.82[ASN][1000 genomes]
rs12550383	0.82[ASN][1000 genomes]
rs12675753	0.82[ASN][1000 genomes]
rs12679311	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12680028	0.84[ASN][1000 genomes]
rs12680451	0.81[ASN][1000 genomes]
rs12682610	0.81[ASN][1000 genomes]
rs13251597	0.81[ASN][1000 genomes]
rs13254233	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13265151	0.82[ASN][1000 genomes]
rs13269597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282488	0.82[ASN][1000 genomes]
rs1585295	0.80[ASN][1000 genomes]
rs16892486	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16892496	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28407429	0.81[ASN][1000 genomes]
rs28413119	0.82[ASN][1000 genomes]
rs28437828	0.82[ASN][1000 genomes]
rs34049275	0.81[ASN][1000 genomes]
rs34092076	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35850605	0.81[ASN][1000 genomes]
rs35978837	0.82[ASN][1000 genomes]
rs3890699	0.80[ASN][1000 genomes]
rs3925087	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3925088	0.83[ASN][1000 genomes]
rs4129682	0.84[ASN][1000 genomes]
rs4130640	0.80[ASN][1000 genomes]
rs4130682	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4236801	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4236802	0.85[ASN][1000 genomes]
rs4236803	0.81[ASN][1000 genomes]
rs4236804	0.80[ASN][1000 genomes]
rs4257986	0.80[ASN][1000 genomes]
rs4265160	0.81[ASN][1000 genomes]
rs4288351	0.81[ASN][1000 genomes]
rs4301422	0.85[ASN][1000 genomes]
rs4311632	0.80[ASN][1000 genomes]
rs4332104	0.80[ASN][1000 genomes]
rs4339614	0.80[ASN][1000 genomes]
rs4342559	0.85[ASN][1000 genomes]
rs4358779	0.82[ASN][1000 genomes]
rs4389899	0.82[ASN][1000 genomes]
rs4389900	0.80[ASN][1000 genomes]
rs4428648	0.82[ASN][1000 genomes]
rs4439099	0.82[ASN][1000 genomes]
rs4442117	0.82[ASN][1000 genomes]
rs4443632	0.82[ASN][1000 genomes]
rs4446710	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4454252	0.81[ASN][1000 genomes]
rs4464939	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4529440	0.82[ASN][1000 genomes]
rs4546626	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4570131	0.81[ASN][1000 genomes]
rs4645539	0.82[ASN][1000 genomes]
rs4734190	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734191	0.90[ASN][1000 genomes]
rs4734192	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734196	0.82[ASN][1000 genomes]
rs4734197	0.82[ASN][1000 genomes]
rs4734198	0.82[ASN][1000 genomes]
rs4734203	0.81[ASN][1000 genomes]
rs4734204	0.81[ASN][1000 genomes]
rs4735091	0.83[ASN][1000 genomes]
rs4735094	0.85[ASN][1000 genomes]
rs4735095	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735096	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4735097	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4735098	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4735108	0.82[ASN][1000 genomes]
rs4735109	0.82[ASN][1000 genomes]
rs4735110	0.82[ASN][1000 genomes]
rs4735114	0.81[ASN][1000 genomes]
rs56896876	0.82[ASN][1000 genomes]
rs5778	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62511091	0.81[ASN][1000 genomes]
rs6983376	0.82[ASN][1000 genomes]
rs6985869	0.80[ASN][1000 genomes]
rs6990140	0.82[ASN][1000 genomes]
rs6998731	0.81[ASN][1000 genomes]
rs6998883	0.81[ASN][1000 genomes]
rs7004206	0.81[AMR][1000 genomes]
rs7010380	0.82[ASN][1000 genomes]
rs7817746	0.81[ASN][1000 genomes]
rs7817909	0.81[ASN][1000 genomes]
rs7821463	0.83[ASN][1000 genomes]
rs7823804	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7825689	0.82[ASN][1000 genomes]
rs7828207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7829544	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7832552	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7840000	0.83[ASN][1000 genomes]
rs7844643	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7845815	0.82[ASN][1000 genomes]
rs9297421	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110121400-110144600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:110138400-110140000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:110138400-110142600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:110139200-110140800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:110139200-110141000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:110139400-110140200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:110139600-110141200	Weak transcription	Osteobl	bone
8	chr8:110139600-110142000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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