Variant report

Variant	rs10087882
Chromosome Location	chr8:10823994-10823995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10094007	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10094337	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10096634	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10102369	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10111178	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10112255	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11250100	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11985330	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11995188	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73537380	0.84[EUR][1000 genomes]
rs7816172	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10822400-10824000	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr8:10823200-10824400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10823600-10824600	Weak transcription	Brain Anterior Caudate	brain
4	chr8:10823800-10824000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:10823800-10824800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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