Variant report

Variant	rs10088545
Chromosome Location	chr8:130110836-130110837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10091200	0.86[AFR][1000 genomes]
rs10093139	0.86[AFR][1000 genomes]
rs10105749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107730	0.86[AFR][1000 genomes]
rs12335336	0.86[AFR][1000 genomes]
rs28485605	0.86[AFR][1000 genomes]
rs28564354	0.86[AFR][1000 genomes]
rs28637039	0.86[AFR][1000 genomes]
rs28669095	1.00[AMR][1000 genomes]
rs28847054	0.86[AFR][1000 genomes]
rs55816406	1.00[AMR][1000 genomes]
rs73708255	1.00[AMR][1000 genomes]
rs73708278	1.00[AMR][1000 genomes]
rs73708281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130085600-130115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130094800-130112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:130110400-130115200	ZNF genes & repeats	Dnd41	blood
4	chr8:130110800-130113200	Weak transcription	Fetal Thymus	thymus
5	chr8:130110800-130116000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:130110800-130116000	Weak transcription	Pancreas	Pancrea
7	chr8:130110800-130116000	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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