Variant report

Variant	rs10089618
Chromosome Location	chr8:107727674-107727675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107691238..107693332-chr8:107727540..107729802,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10087077	0.85[EUR][1000 genomes]
rs10089357	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10089890	0.84[EUR][1000 genomes]
rs10090534	0.87[EUR][1000 genomes]
rs10091390	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10091611	0.85[EUR][1000 genomes]
rs10092665	0.85[EUR][1000 genomes]
rs10099361	0.83[EUR][1000 genomes]
rs10100839	0.83[EUR][1000 genomes]
rs10101102	0.89[EUR][1000 genomes]
rs10102112	0.83[EUR][1000 genomes]
rs10104941	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10106834	0.87[EUR][1000 genomes]
rs10108240	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10110610	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10283128	0.85[EUR][1000 genomes]
rs10283130	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12543558	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12544138	0.85[EUR][1000 genomes]
rs12547372	0.83[EUR][1000 genomes]
rs12547608	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12548149	0.89[EUR][1000 genomes]
rs13254031	0.85[EUR][1000 genomes]
rs13255878	0.85[EUR][1000 genomes]
rs13259080	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13268490	0.80[EUR][1000 genomes]
rs16875002	0.85[EUR][1000 genomes]
rs16875065	0.85[EUR][1000 genomes]
rs16875066	0.85[EUR][1000 genomes]
rs1872282	0.83[EUR][1000 genomes]
rs2035515	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2126580	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28422868	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28808577	0.88[EUR][1000 genomes]
rs28921395	0.85[EUR][1000 genomes]
rs35108468	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35499727	0.89[EUR][1000 genomes]
rs35919651	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36011510	0.85[EUR][1000 genomes]
rs3736179	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3779996	0.87[EUR][1000 genomes]
rs59316573	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7461484	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297385	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
3	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
6	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:107718000-107728600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr8:107719000-107738200	Weak transcription	NHEK	skin
16	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
17	chr8:107719600-107729800	Weak transcription	Spleen	Spleen
18	chr8:107719600-107731000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:107719600-107732400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:107719600-107737000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:107719600-107737400	Weak transcription	Psoas Muscle	Psoas
22	chr8:107719600-107738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:107719600-107738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:107719600-107738400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:107719600-107739600	Weak transcription	Left Ventricle	heart
26	chr8:107719600-107762400	Weak transcription	Lung	lung
27	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
28	chr8:107719600-107775200	Weak transcription	Gastric	stomach
29	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
30	chr8:107719800-107730200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr8:107719800-107731200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr8:107719800-107738200	Weak transcription	Ovary	ovary
33	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:107720000-107732400	Weak transcription	HepG2	liver
35	chr8:107720000-107738200	Weak transcription	HMEC	breast
36	chr8:107720600-107738200	Weak transcription	Aorta	Aorta
37	chr8:107720600-107738200	Weak transcription	Fetal Stomach	stomach
38	chr8:107720600-107738400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:107720800-107736000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:107721200-107738200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr8:107721800-107728200	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr8:107722200-107728200	Strong transcription	Liver	Liver
43	chr8:107723200-107738000	Weak transcription	K562	blood
44	chr8:107724000-107732600	Weak transcription	Osteobl	bone
45	chr8:107724000-107737200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:107724000-107738000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr8:107724200-107728400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr8:107724200-107730400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr8:107724200-107731000	Weak transcription	Primary T cells from cord blood	blood
50	chr8:107724200-107731000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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