Variant report

Variant	rs10089869
Chromosome Location	chr8:10634324-10634325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10628530..10631997-chr8:10633640..10636320,4	K562	blood:
2	chr8:10633410..10636281-chr8:10695946..10698229,2	K562	blood:
3	chr8:10616130..10621063-chr8:10631004..10634975,5	K562	blood:

Variant related genes	Relation type
ENSG00000253695	Chromatin interaction
ENSG00000258724	Chromatin interaction
ENSG00000254093	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10089548	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10096939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10110723	1.00[CEU][hapmap]
rs10481452	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10503411	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10503412	1.00[CEU][hapmap]
rs1078543	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11774457	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11778578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11779090	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11779094	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11779336	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs11783803	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13265197	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs13269447	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs17152366	0.96[EUR][1000 genomes]
rs17152410	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17152412	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17152542	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2409660	0.91[EUR][1000 genomes]
rs2409664	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2898245	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs2898250	0.92[EUR][1000 genomes]
rs4240668	0.94[EUR][1000 genomes]
rs4840515	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4840518	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs4841447	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs4841448	1.00[CHB][hapmap]
rs4841449	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4841455	0.86[CEU][hapmap]
rs6983956	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6984094	1.00[CHB][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7836178	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs891560	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1022582	chr8:10571218-10636162	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv539468	chr8:10571218-10636162	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1024806	chr8:10605438-10662555	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1031709	chr8:10610545-10657726	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv2764105	chr8:10610557-10657726	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
16	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1023085	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv539470	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
20	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
21	nsv1026230	chr8:10618928-10652924	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv539472	chr8:10618928-10652924	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
24	nsv522226	chr8:10628947-10635317	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10610800-10662000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:10618000-10634400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:10618800-10634400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:10618800-10636400	Weak transcription	Psoas Muscle	Psoas
5	chr8:10618800-10646200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:10618800-10665200	Weak transcription	Fetal Brain Female	brain
7	chr8:10619000-10636400	Weak transcription	HSMM	muscle
8	chr8:10619200-10634400	Weak transcription	HSMMtube	muscle
9	chr8:10619200-10635800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:10619200-10644800	Weak transcription	Small Intestine	intestine
11	chr8:10619200-10656400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:10619400-10661600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr8:10620000-10669800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr8:10620200-10645000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:10621200-10634400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:10621200-10662000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:10621400-10634400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:10621400-10656000	Weak transcription	HepG2	liver
19	chr8:10622000-10639000	Weak transcription	HMEC	breast
20	chr8:10622800-10641000	Weak transcription	Hela-S3	cervix
21	chr8:10622800-10656000	Weak transcription	A549	lung
22	chr8:10623200-10634600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:10623200-10650000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr8:10623400-10646400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:10623400-10656800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:10623400-10662600	Weak transcription	Fetal Thymus	thymus
27	chr8:10623400-10662800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr8:10623400-10665000	Weak transcription	Fetal Intestine Large	intestine
29	chr8:10623600-10643800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:10623600-10644200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr8:10623600-10648800	Weak transcription	Fetal Intestine Small	intestine
32	chr8:10623600-10667000	Weak transcription	Thymus	Thymus
33	chr8:10623800-10639200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:10623800-10648800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr8:10623800-10649600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr8:10623800-10656800	Weak transcription	Gastric	stomach
37	chr8:10624000-10639400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr8:10624000-10649600	Weak transcription	Pancreas	Pancrea
39	chr8:10624200-10634600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr8:10624200-10644000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr8:10624800-10642400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr8:10624800-10646800	Weak transcription	Brain Germinal Matrix	brain
43	chr8:10625000-10634400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr8:10625000-10639200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:10628800-10639200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr8:10629200-10641000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:10629800-10637600	Weak transcription	Primary T cells from cord blood	blood
48	chr8:10629800-10639000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:10629800-10639200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:10629800-10639400	Weak transcription	Primary B cells from cord blood	blood

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