Variant report

Variant	rs10090129
Chromosome Location	chr8:63169599-63169600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63163914..63166859-chr8:63167989..63170549,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10090048	0.93[EUR][1000 genomes]
rs10094502	0.93[EUR][1000 genomes]
rs10095168	0.85[EUR][1000 genomes]
rs10099748	0.85[EUR][1000 genomes]
rs10101551	0.91[EUR][1000 genomes]
rs10448028	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1154592	0.85[EUR][1000 genomes]
rs11778470	0.87[EUR][1000 genomes]
rs12216817	0.89[AFR][1000 genomes]
rs12548234	0.85[EUR][1000 genomes]
rs12549042	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12679323	0.85[EUR][1000 genomes]
rs12681000	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13252919	0.85[EUR][1000 genomes]
rs13255752	0.86[EUR][1000 genomes]
rs13261910	0.81[EUR][1000 genomes]
rs13262465	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13264993	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13268451	0.93[EUR][1000 genomes]
rs13271280	0.85[EUR][1000 genomes]
rs13281158	0.84[EUR][1000 genomes]
rs1351702	0.93[EUR][1000 genomes]
rs1384675	0.86[EUR][1000 genomes]
rs1384683	0.93[EUR][1000 genomes]
rs1384684	0.93[EUR][1000 genomes]
rs1483165	0.86[EUR][1000 genomes]
rs1483173	0.92[EUR][1000 genomes]
rs1483177	0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1552205	0.87[EUR][1000 genomes]
rs2272014	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2272015	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2351652	0.83[EUR][1000 genomes]
rs2351653	0.83[EUR][1000 genomes]
rs2882742	0.87[EUR][1000 genomes]
rs4262319	0.91[EUR][1000 genomes]
rs4637821	0.84[EUR][1000 genomes]
rs4738948	0.92[EUR][1000 genomes]
rs5020321	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6983788	0.92[EUR][1000 genomes]
rs7017869	0.87[EUR][1000 genomes]
rs7017975	0.87[EUR][1000 genomes]
rs7834815	0.84[EUR][1000 genomes]
rs900491	0.87[EUR][1000 genomes]
rs900492	0.86[EUR][1000 genomes]
rs9298062	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643536	0.87[EUR][1000 genomes]
rs9987255	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016883	chr8:63110741-63171354	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63163200-63190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63166800-63172000	Weak transcription	Fetal Brain Male	brain

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