Variant report

Variant	rs10090582
Chromosome Location	chr8:54440206-54440207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10093741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216947	0.88[ASN][1000 genomes]
rs10504155	0.88[ASN][1000 genomes]
rs11991614	0.88[CEU][hapmap]
rs11992458	1.00[CEU][hapmap];0.94[MEX][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28587342	0.87[AMR][1000 genomes]
rs28649694	0.85[AMR][1000 genomes]
rs28664823	0.87[AMR][1000 genomes]
rs6473841	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008165	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10090582	RB1CC1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54436400-54441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:54437200-54441800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:54437200-54441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:54437400-54441600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:54437600-54440400	Weak transcription	Osteobl	bone
6	chr8:54437600-54441200	Weak transcription	HMEC	breast
7	chr8:54437600-54441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:54437800-54440400	Weak transcription	Fetal Heart	heart
9	chr8:54437800-54441800	Weak transcription	Esophagus	oesophagus
10	chr8:54437800-54441800	Weak transcription	Ovary	ovary
11	chr8:54438000-54440400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:54440200-54440600	Flanking Active TSS	A549	lung
13	chr8:54440200-54443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links