Variant report

Variant	rs10091993
Chromosome Location	chr8:10931829-10931830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10099881	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10105315	0.83[ASN][1000 genomes]
rs10108304	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10113735	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11250110	0.83[CEU][hapmap]
rs11250111	0.82[CEU][hapmap]
rs11250114	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11250115	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11986748	0.94[CEU][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11991121	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12542383	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17723229	0.80[ASN][1000 genomes]
rs17779093	0.89[CEU][hapmap]
rs28510951	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28719598	0.88[ASN][1000 genomes]
rs2898258	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35167667	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4074356	0.89[CEU][hapmap]
rs4262293	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55676920	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55813668	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59724806	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60134032	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66475020	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6994928	0.83[CEU][hapmap]
rs6999969	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7010099	0.83[CEU][hapmap]
rs7014291	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7463505	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7812573	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7822400	0.89[CEU][hapmap]
rs9329235	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
2	chr8:10925600-10935800	Weak transcription	Spleen	Spleen
3	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:10929600-10932800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:10930200-10936000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:10930800-10932000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:10931200-10932000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:10931200-10932000	Enhancers	HSMMtube	muscle
9	chr8:10931200-10932200	Enhancers	Brain Angular Gyrus	brain
10	chr8:10931200-10932200	Enhancers	HMEC	breast
11	chr8:10931400-10932000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:10931400-10932400	Enhancers	Brain Germinal Matrix	brain
13	chr8:10931600-10932200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr8:10931600-10932200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:10931600-10935200	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:10931800-10932000	Enhancers	Brain Anterior Caudate	brain
17	chr8:10931800-10932000	Enhancers	Brain Cingulate Gyrus	brain
18	chr8:10931800-10932000	Enhancers	Brain Substantia Nigra	brain
19	chr8:10931800-10932000	Enhancers	Ovary	ovary
20	chr8:10931800-10932600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:10931800-10935000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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