Variant report

Variant	rs10092232
Chromosome Location	chr8:62380111-62380112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62379782..62380618-chr8:62475892..62476541,2	K562	blood:
2	chr8:62379715..62380732-chr8:62427877..62428562,3	MCF-7	breast:
3	chr8:62247832..62248787-chr8:62379922..62380668,2	MCF-7	breast:
4	chr8:62379524..62380909-chr8:62475525..62476519,9	MCF-7	breast:
5	chr8:62248452..62249208-chr8:62379820..62380370,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10087488	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089170	1.00[AMR][1000 genomes]
rs10094823	1.00[AMR][1000 genomes]
rs10096419	1.00[AMR][1000 genomes]
rs10096503	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098405	1.00[AMR][1000 genomes]
rs10099005	1.00[AMR][1000 genomes]
rs10099587	1.00[AMR][1000 genomes]
rs10100762	1.00[AMR][1000 genomes]
rs10101335	1.00[AMR][1000 genomes]
rs10104313	1.00[AMR][1000 genomes]
rs10104459	1.00[AMR][1000 genomes]
rs10108389	1.00[AMR][1000 genomes]
rs10113315	1.00[AMR][1000 genomes]
rs10216428	1.00[AMR][1000 genomes]
rs10216571	1.00[AMR][1000 genomes]
rs10216589	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13439529	1.00[AMR][1000 genomes]
rs28408834	1.00[AMR][1000 genomes]
rs28410763	0.81[AFR][1000 genomes]
rs28437527	1.00[AMR][1000 genomes]
rs28478401	1.00[AMR][1000 genomes]
rs28491327	1.00[AMR][1000 genomes]
rs28550168	1.00[AMR][1000 genomes]
rs28562585	1.00[AMR][1000 genomes]
rs28582737	1.00[AMR][1000 genomes]
rs28592046	1.00[AMR][1000 genomes]
rs28642327	1.00[AMR][1000 genomes]
rs28650382	1.00[AMR][1000 genomes]
rs28664022	1.00[AMR][1000 genomes]
rs28667387	1.00[AMR][1000 genomes]
rs28668164	1.00[AMR][1000 genomes]
rs28670089	1.00[AMR][1000 genomes]
rs28670423	1.00[AMR][1000 genomes]
rs28714370	1.00[AMR][1000 genomes]
rs28723591	1.00[AMR][1000 genomes]
rs28754430	1.00[AMR][1000 genomes]
rs28831834	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4284040	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9298054	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62364400-62380800	Weak transcription	Brain Germinal Matrix	brain
2	chr8:62366800-62383200	Weak transcription	Brain Anterior Caudate	brain
3	chr8:62367400-62381600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:62370600-62386600	Weak transcription	Fetal Brain Male	brain
5	chr8:62375600-62383000	Weak transcription	Fetal Brain Female	brain
6	chr8:62379000-62381200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:62379800-62380200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr8:62379800-62380200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr8:62379800-62380200	Enhancers	Brain Hippocampus Middle	brain
10	chr8:62379800-62380400	Active TSS	Adipose Nuclei	Adipose
11	chr8:62380000-62380200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:62380000-62380200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:62380000-62380200	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:62380000-62380200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr8:62380000-62380200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr8:62380000-62380200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:62380000-62380200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:62380000-62380200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:62380000-62380200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr8:62380000-62380200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:62380000-62380200	Enhancers	Liver	Liver
22	chr8:62380000-62380200	Enhancers	Brain Cingulate Gyrus	brain
23	chr8:62380000-62380200	Enhancers	Brain Substantia Nigra	brain
24	chr8:62380000-62380200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr8:62380000-62380200	Enhancers	Left Ventricle	heart
26	chr8:62380000-62380200	Enhancers	Thymus	Thymus
27	chr8:62380000-62380200	Enhancers	GM12878-XiMat	blood
28	chr8:62380000-62380200	Enhancers	HUVEC	blood vessel
29	chr8:62380000-62380200	Enhancers	NHEK	skin
30	chr8:62380000-62380200	Flanking Active TSS	Osteobl	bone
31	chr8:62380000-62380400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:62380000-62380400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:62380000-62380600	Active TSS	K562	blood

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