Variant report

Variant	rs1009448
Chromosome Location	chr11:33706353-33706354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33705541..33707910-chr11:33713966..33716310,2	K562	blood:
2	chr11:33705983..33707697-chr11:33711196..33713737,2	K562	blood:
3	chr11:33705260..33707766-chr11:33711578..33713625,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10836098	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11032342	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177120	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446317	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818052	0.82[JPT][hapmap]
rs4142964	0.98[EUR][1000 genomes]
rs4542380	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61736869	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs752526	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
2	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
3	chr11:33703400-33706800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:33703800-33706600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:33703800-33707000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:33704200-33706600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:33704200-33707000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:33704200-33711200	Weak transcription	Lung	lung
9	chr11:33704400-33706600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:33704400-33706800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:33704400-33712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:33704600-33706400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:33704600-33706600	Weak transcription	NHEK	skin
14	chr11:33704600-33706800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:33704800-33706600	Weak transcription	HMEC	breast
16	chr11:33705000-33706400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:33705000-33706600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:33705200-33706400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:33705200-33706600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:33705200-33708000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:33705200-33710400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:33705200-33710400	Weak transcription	Pancreas	Pancrea
23	chr11:33705400-33706800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:33705400-33707000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:33705800-33706400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:33705800-33706800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:33706000-33706400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:33706000-33706400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:33706000-33708200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:33706000-33709400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:33706000-33714200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:33706200-33707800	Enhancers	NHDF-Ad	bronchial
33	chr11:33706200-33712200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:33706200-33712200	Weak transcription	Brain Germinal Matrix	brain
35	chr11:33706200-33712400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links