Variant report

Variant	rs10098119
Chromosome Location	chr8:9723053-9723054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11249961	0.87[EUR][1000 genomes]
rs11249963	0.81[EUR][1000 genomes]
rs12114434	0.83[EUR][1000 genomes]
rs12114435	0.83[EUR][1000 genomes]
rs12548657	0.83[EUR][1000 genomes]
rs2048653	0.83[EUR][1000 genomes]
rs2048654	0.83[EUR][1000 genomes]
rs2409618	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4840447	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6601383	1.00[CEU][hapmap]
rs9644712	0.87[EUR][1000 genomes]
rs9657510	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv520485	chr8:9718278-9729939	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9719800-9727400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:9723000-9723200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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