Variant report
| Variant | rs10098213 |
|---|---|
| Chromosome Location | chr8:63833585-63833586 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10093212 | 0.80[AMR][1000 genomes] |
| rs10097974 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11989852 | 0.90[JPT][hapmap] |
| rs11990678 | 0.90[JPT][hapmap] |
| rs11992351 | 0.82[AMR][1000 genomes] |
| rs11993981 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13272238 | 0.80[AMR][1000 genomes] |
| rs17194931 | 0.90[JPT][hapmap] |
| rs17279320 | 0.90[JPT][hapmap] |
| rs17279355 | 0.90[JPT][hapmap] |
| rs17279558 | 0.90[JPT][hapmap] |
| rs1869729 | 0.82[AMR][1000 genomes] |
| rs3780127 | 0.90[JPT][hapmap] |
| rs4237061 | 0.80[AMR][1000 genomes] |
| rs4237063 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4237064 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4509316 | 0.80[AMR][1000 genomes] |
| rs4739021 | 0.82[AMR][1000 genomes] |
| rs7014513 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7015302 | 0.86[JPT][hapmap] |
| rs7463670 | 0.80[AMR][1000 genomes] |
| rs7830289 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831341 | chr8:63658694-63852213 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63832800-63833800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
